SNP Profiles matching BE 2

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
1._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
2._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
3._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
4._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
5._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
6._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
7._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
8._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
9._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
10._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
11._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
12._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
13._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
14._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
15._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
16._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
17._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
18._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
19._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
20._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
21._GC-01-047-3-02	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT
22._BE_2	CT	AG	CG	TT	TT	CC	TT	CC	CT	AA	AA	TT	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
1._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
2._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
3._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
4._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
5._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
6._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
7._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
8._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
9._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
10._BE_2	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
11._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
12._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
13._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
14._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
15._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
16._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
17._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
18._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
19._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
20._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
21._GC-01-047-3-02	AA	GG	TT	CT	GG	GG	AG	TT	AA	CG	TT	CC	CC	AA
22._BE_2	AA	GG	TT	CT	GG	GG	AA	TT	AA	CG	TT	CC	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
1._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
2._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
3._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
4._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
5._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
6._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
7._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
8._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
9._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
10._BE_2	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
11._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
12._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
13._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
14._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
15._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
16._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
17._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
18._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
19._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
20._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
21._GC-01-047-3-02	GG	AA	CT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X
22._BE_2	GG	AA	TT	AA	CC	AA	TT	TT	CC	AT	GG	X_X	X_X	X_X

Input profile: BE_2

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 4

Dapeng Zhang, 2016

1._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 8 > FP

Dapeng Zhang, 2016

2._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 16 > F

Dapeng Zhang, 2016

3._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 12 > F

Dapeng Zhang, 2016

4._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302

Dapeng Zhang, 2016

5._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 14

Dapeng Zhang, 2016

6._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 13

Dapeng Zhang, 2016

7._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 11

Dapeng Zhang, 2016

8._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 6

Dapeng Zhang, 2016

9._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 3

Dapeng Zhang, 2016

10._BE_2

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1302 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

11._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

12._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

16._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

17._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

18._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

19._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13

20._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

21._BE_2 GC-01-047-3-02

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP4

22._BE_2

97.4 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25